[CPN] Proposed changes in PhyloCode Article 11.9

George Sangster g.sangster at planet.nl
Fri Dec 21 17:59:10 EST 2018


Hi Phil,

Same here: OK by me.

George Sangster



Op 21-12-2018 om 22:58 schreef Richard G. Olmstead:
> Phil,
> Reads okay to me.
> Dick
>
>
>
>> On Dec 21, 2018, at 12:22 PM, Cantino, Philip <cantino at ohio.edu 
>> <mailto:cantino at ohio.edu>> wrote:
>>
>> Dear CPN members,
>>
>> The attached second draft of the proposed changes in Art. 11.9 
>> incorporates the ideas expressed by Michel and others in our 
>> discussion this past week.  He, Nico and Kevin have already seen this 
>> draft and are comfortable with it.  In the absence of any other 
>> concerns having been raised by CPN members, Kevin and I will consider 
>> this change to be accepted by the CPN.  However, if you think a 
>> formal vote is needed, please let me know.
>> I wish the best to everyone for the holidays!
>>
>> Phil
>>
>>
>>
>>> On Dec 18, 2018, at 8:54 PM, Max Langer <mclanger at ffclrp.usp.br 
>>> <mailto:mclanger at ffclrp.usp.br>> wrote:
>>>
>>>
>>>   Hi all,
>>>
>>>   I agree with Michel that sometimes it may be pointless to include 
>>> a image that is already broadly known, which will mostly be the case 
>>> of published images.
>>>
>>>   So, my take on this is that we may allow referring to a existing 
>>> image, instead of providing an image, but only when this image is a 
>>> published one.
>>>
>>>   The rest of the modifications is fine for me.
>>>
>>>   max
>>>
>>>
>>> Em ter, 18 de dez de 2018 às 15:11, Adl, Sina <sina.adl at usask.ca 
>>> <mailto:sina.adl at usask.ca>> escreveu:
>>>
>>>     Thank you Phil,
>>>     I think this type of question, and others we have not thought
>>>     of, and others we have not discussed, will continue to arise
>>>     from members and users.
>>>     It is probably a good time to start thinking about how to handle
>>>     queries and revisions after publication. A task for the
>>>     executive to forward proposals about committees to handle issues
>>>     after publication, for the next decades. We have a few very
>>>     different models in existing Codes. I don't think, having worked
>>>     closely with some of them, that any of them are effective for
>>>     the 21st century -- they were not effective at handling change
>>>     at the  end of the 20th. Sina
>>>
>>>         Sina Adl     Professor
>>>         Department of Soil Sciences
>>>         College of Agriculture and Bioresources
>>>         University of Saskatchewan
>>>         (306) 966-6866
>>>     agbio.usask.ca <http://agbio.usask.ca/>
>>>
>>>     Editor-in-Chief, Rhizosphere
>>>     http://www.journals.elsevier.com/rhizosphere/
>>>
>>>
>>>
>>>     -----Original Message-----
>>>     From: CPN <cpn-bounces at listserv.ohio.edu
>>>     <mailto:cpn-bounces at listserv.ohio.edu>> On Behalf Of Cantino, Philip
>>>     Sent: Tuesday, December 18, 2018 10:31
>>>     To: Committee on Phylogenetic Nomenclature
>>>     <cpn at listserv.ohio.edu <mailto:cpn at listserv.ohio.edu>>
>>>     Cc: Max Langer <mclanger at ffclrp.usp.br
>>>     <mailto:mclanger at ffclrp.usp.br>>
>>>     Subject: Re: [CPN] Proposed changes in PhyloCode Article 11.9
>>>
>>>     Dear Colleagues,
>>>
>>>     I think the discussion may be getting overly broad.  Images are
>>>     not required in connection with the vast majority of
>>>     phylogenetic definitions.  The article we are considering
>>>     concerns a narrow situation—the use of specimens that are not
>>>     types as specifiers.  For the most part, this situation will
>>>     only arise when one is defining the names of clades within a
>>>     species or a small complex of species (see Art. 11.7). 
>>>     Currently, Art. 11.9 requires an author to submit to RegNum a
>>>     description of a non-type specimen used as a specifier. We are
>>>     proposing to permit an image to be submitted instead of a
>>>     description if the author prefers.  However, a description will
>>>     still be an acceptable alternative.  In view of Kevin’s comments
>>>     about the availability of non-copyrighted images and the ease
>>>     with which permission would likely be granted to reuse images
>>>     from museum collections, inability to submit an image is likely
>>>     to be a rare event.  When it does occur, a description could be
>>>     submitted instead.  I therefore don’t think we need to permit
>>>     reference to an existing image to substitute for submitting the
>>>     image itself.
>>>
>>>     It would be good to hear from others if they have an opinion on
>>>     this.
>>>
>>>     Best regards,
>>>     Phil
>>>
>>>
>>>     > On Dec 17, 2018, at 3:03 PM, Michel LAURIN
>>>     <michel.laurin at mnhn.fr <mailto:michel.laurin at mnhn.fr>> wrote:
>>>     >
>>>     > Dear colleagues,
>>>     >
>>>     > Following Phil's and Kevin's messages, with which I agree, I
>>>     wish to clarify that my intention is not to suggest that
>>>     reference to just any image anywhere on the Internet or in any
>>>     publication is as good as having the image uploaded into Regnum
>>>     and published properly. However, note that many journals, even
>>>     prominent ones like Nature and Systematic Biology have an
>>>     abysmal record of maintaining supplements (they now decline
>>>     responsibility and expect authors to submit these on external
>>>     repositories like Dryad, but even there, the guarantee is that
>>>     the supplements will be maintained 50 years, which is not that
>>>     long for biological nomenclature). So, perhaps it would be worth
>>>     stating somewhere that such images should be in the body of the
>>>     paper, rather than in supplements, if that is not implied by
>>>     other articles of the code.
>>>     >
>>>     > Back to the main point, I think that publication images of
>>>     specimens should be strongly encouraged, perhaps by a
>>>     recommendation. But if an author does not wish to, or cannot
>>>     produce an image of the specimen, he should at least reference
>>>     existing images, if some are available. That is better than
>>>     nothing. The text could be developed to clarify this, I suppose.
>>>     I tried to keep it short and simple, but perhaps it was too
>>>     short and too simple.
>>>     >
>>>     > Best wishes,
>>>     >
>>>     > Michel
>>>     >
>>>     > ----- Mail d’origine -----
>>>     > De: de Queiroz, Kevin <deQueirozK at si.edu
>>>     <mailto:deQueirozK at si.edu>>
>>>     > À: Cantino, Philip <cantino at ohio.edu
>>>     <mailto:cantino at ohio.edu>>, Michel LAURIN <michel.laurin at mnhn.fr
>>>     <mailto:michel.laurin at mnhn.fr>>
>>>     > Cc: Committee on Phylogenetic Nomenclature
>>>     <cpn at listserv.ohio.edu <mailto:cpn at listserv.ohio.edu>>, Max
>>>     Langer <mclanger at ffclrp.usp.br <mailto:mclanger at ffclrp.usp.br>>
>>>     > Envoyé: Mon, 17 Dec 2018 20:05:42 +0100 (CET)
>>>     > Objet: Re: [CPN] Proposed changes in PhyloCode Article 11.9
>>>     >
>>>     > For images in the Wikimedia Commons, it seems that they may be
>>>     freely reused, so perhaps they could simply be copied and
>>>     uploaded to Regnum.
>>>     >
>>>     > In the case of images associated with museum collections,
>>>     permission could likely be obtained to reuse the image, although
>>>     such images will be rare for specimens that are not types.
>>>     >
>>>     > In the case of images in publications, if the publication is
>>>     open access, the image could perhaps be uploaded to RegNum.  If
>>>     it is not open access, I think it would be acceptable to cite
>>>     the publication with the relevant figure reference.
>>>     >
>>>     > Kevin
>>>     >
>>>     > On 12/17/18, 11:59 AM, "CPN on behalf of Cantino, Philip"
>>>     <cpn-bounces at listserv.ohio.edu
>>>     <mailto:cpn-bounces at listserv.ohio.edu> on behalf of
>>>     cantino at ohio.edu <mailto:cantino at ohio.edu>> wrote:
>>>     >
>>>     >    Dear Michel (and other CPN members),
>>>     >
>>>     >    I initially liked Michel’s suggestion, but as I thought
>>>     more about it, I became concerned about the longevity of the
>>>     public repository.  Do we want to rely on the continued
>>>     existence of a repository that we have no control over?  In
>>>     contrast, the longevity of an image that resides in the RegNum
>>>     database is fully under the control of the ISPN.  I am not
>>>     firmly opposed to Michel’s suggestion, but I would like to know
>>>     what others think.
>>>     >
>>>     >    Phil
>>>     >
>>>     >
>>>     >> On Dec 14, 2018, at 4:37 AM, Michel LAURIN
>>>     <michel.laurin at mnhn.fr <mailto:michel.laurin at mnhn.fr>> wrote:
>>>     >>
>>>     >> Dear colleagues,
>>>     >>
>>>     >> I agree with the proposed revision. However, I think that we
>>>     could perhaps improve it a little by adding something like this,
>>>     after this sentence "When a specimen that is not a type is used
>>>     as a specifier in a phylogenetic definition, either a brief
>>>     description or an image of the specimen must be provided,
>>>     sufficient to convey a mental image to a non-specialist and
>>>     distinguish the specimen from organisms with which it might be
>>>     confused. "
>>>     >>
>>>     >> I suggest that we add something like: "If no image is
>>>     provided but if such an image has been published or is available
>>>     in public repositories (such as Wikimedia Commons), a reference
>>>     to such an image, with all the information necessary to retrieve
>>>     it and identify it unambiguously, must be provided."  The idea
>>>     is that in some cases, systematists may not feel compelled to
>>>     provide a new image of the specimen if one exists, but the
>>>     existence of that image may not be widely known, especially if
>>>     it is in a small, local publication. I think that if such an
>>>     image exists, the minimal requirement would be to mention it.
>>>     >>
>>>     >> Best wishes,
>>>     >>
>>>     >> Michel
>>>     >>
>>>     >> ----- Mail d’origine -----
>>>     >> De: Cantino, Philip <cantino at ohio.edu <mailto:cantino at ohio.edu>>
>>>     >> À: Committee on Phylogenetic Nomenclature
>>>     <cpn at listserv.ohio.edu <mailto:cpn at listserv.ohio.edu>>
>>>     >> Cc: Max Langer <mclanger at ffclrp.usp.br
>>>     <mailto:mclanger at ffclrp.usp.br>>
>>>     >> Envoyé: Fri, 14 Dec 2018 02:53:23 +0100 (CET)
>>>     >> Objet: [CPN] Proposed changes in PhyloCode Article 11.9
>>>     >>
>>>     >> Dear CPN members,
>>>     >>
>>>     >> When I sent you version 6 of the code last month, I thought
>>>     it would be the final draft unless the CPN calls for changes. 
>>>     However, in the process of revising Appendix A (which in itself
>>>     does not require CPN approval) a concern arose, which our
>>>     proposed revision of Article 11.9 is intended to address.
>>>     >>
>>>     >> The attached document also includes two relevant articles in
>>>     which no changes are proposed (11.7 and 11.8).  For context, it
>>>     is important to read both of them before considering the
>>>     proposed changes in Art. 11.9.
>>>     >>
>>>     >> Please look this over soon and send your comments by next
>>>     Friday (Dec. 21) by replying to this message (reply to all).  I
>>>     don’t think this will take anyone more than five minutes, so a
>>>     week seems more than sufficient, but the deadline can be
>>>     extended if some of you are away from email due to travel.
>>>     >>
>>>     >> Thank you.
>>>     >>
>>>     >> Phil
>>>     >>
>>>     >>
>>>     >>
>>>     >> --
>>>     >> Michel Laurin
>>>     >> CR2P, UMR 7207
>>>     >> Muséum National d'Histoire Naturelle
>>>     >> Bâtiment de Géologie
>>>     >> Case postale 48
>>>     >> 43 rue Buffon
>>>     >> F-75231 Paris cedex 05
>>>     >> FRANCE
>>>     >> http://www2.mnhn.fr/hdt203/info/laurin.php
>>>     <http://www2.mnhn.fr/hdt203/info/laurin.php>
>>>     >> E-mail: michel.laurin at mnhn.fr <mailto:michel.laurin at mnhn.fr>
>>>     >
>>>     >
>>>     > _______________________________________________
>>>     >    CPN mailing list
>>>     > CPN at listserv.ohio.edu <mailto:CPN at listserv.ohio.edu>
>>>     > http://listserv.ohio.edu/mailman/listinfo/cpn
>>>     >
>>>     >
>>>     >
>>>     > --
>>>     > Michel Laurin
>>>     > CR2P, UMR 7207
>>>     > Muséum National d'Histoire Naturelle
>>>     > Bâtiment de Géologie
>>>     > Case postale 48
>>>     > 43 rue Buffon
>>>     > F-75231 Paris cedex 05
>>>     > FRANCE
>>>     > http://www2.mnhn.fr/hdt203/info/laurin.php
>>>     <http://www2.mnhn.fr/hdt203/info/laurin.php>
>>>     > E-mail: michel.laurin at mnhn.fr <mailto:michel.laurin at mnhn.fr>
>>>
>>>
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>>>
>>>
>>> -- 
>>> Max Cardoso Langer Ph.D. (Bristol, UK)
>>> Departamento de Biologia
>>> Faculdade de Filosofia, Ciencias e Letras de Ribeirao Preto
>>> Universidade de Sao Paulo (USP)
>>> Av. Bandeirantes  3900
>>> 14040-901     Ribeirao Preto,  SP,  BRAZIL
>>>
>>> Phone: +55 16 3315 3844
>>> FAX: +55 16 3315 4886
>>> http://sites.ffclrp.usp.br/paleo/
>>>
>>> //
>>> /
>>> /
>>> /
>>>
>>> /
>>> /
>>> /
>>> //
>>> /
>>> A *semântica* é o último refúgio dos canalhas
>>> /
>>> //
>>> /
>>> /
>>> /
>>> .
>>> /
>>> /
>>> /
>>> //
>>>
>>
>>
>> <Article 11.9_proposed changes_draft 
>> 2.docx>_______________________________________________
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